HL_6R6G_108

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUCCCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6G_108 not in the Motif Atlas

Geometric match to HL_7A0S_004

Geometric discrepancy: 0.3846

The information below is about HL_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_93535.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6R6G|1|K|U|1114
6R6G|1|K|U|1115
6R6G|1|K|C|1116
6R6G|1|K|C|1117
6R6G|1|K|C|1118
6R6G|1|K|A|1119

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain JJ

40S ribosomal protein S27

Chain u

40S ribosomal protein S3a