Motif HL_93535.2 Version HL_93535.2 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8P9A_204 | 8P9A | 0.0923 | 0 | GNRA variation (H) | sR | SSU rRNA | C | 569 | A | 570 | G | 571 | C | 572 | C | 573 | G | 574 | cWW | |
| 2 | HL_8GLP_098 | 8GLP | 0.0585 | 0 | GNRA variation (H) | S2 | SSU rRNA | C | 618 | A | 619 | G | 620 | C | 621 | C | 622 | G | 623 | cWW | |
| 3 | HL_8CRE_205 | 8CRE | 0.0000 | 0 | GNRA variation (H) | CM | SSU rRNA | C | 567 | A | 568 | G | 569 | C | 570 | C | 571 | G | 572 | cWW | |
| 4 | HL_7A0S_046 | 7A0S | 0.5364 | 1 | GNRA | X | LSU rRNA | C | 1797 | G | 1798 | A | 1799 | A | 1800 | A | 1802 | G | 1803 | cWW | tSH |
| 5 | HL_7A0S_004 | 7A0S | 0.8211 | 0 | X | LSU rRNA | C | 133 | G | 134 | U | 135 | A | 136 | A | 137 | G | 138 | cWW | ||
| 6 | HL_8P9A_198 | 8P9A | 0.9516 | 0 | sR | SSU rRNA | U | 368 | A | 369 | A | 370 | G | 371 | G | 372 | G | 373 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGCCG | 3 |
| CGAACAG | 1 |
| CGUAAG | 1 |
| UAAGGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGCC | 3 |
| GAACA | 1 |
| GUAA | 1 |
| AAGG | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- GNRA variation (H) (3)
- (2)
- GNRA (1)
- Basepair signature
- cWW-F-F-F-F
- Heat map statistics
- Min 0.06 | Avg 0.53 | Max 0.97
Coloring options: