HL_6R6G_118
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- AUUGCAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 6R6G|1|K|U|1621, 6R6G|1|K|U|1622, 6R6G|1|K|A|1623
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6R6G_118 not in the Motif Atlas
- Homologous match to HL_4V88_219
- Geometric discrepancy: 0.2235
- The information below is about HL_4V88_219
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6R6G|1|K|A|1614
6R6G|1|K|U|1615
6R6G|1|K|U|1616
6R6G|1|K|G|1617
6R6G|1|K|C|1618
6R6G|1|K|A|1619
6R6G|1|K|A|1620
6R6G|1|K|U|1621
6R6G|1|K|U|1622
6R6G|1|K|A|1623
6R6G|1|K|U|1624
6R6G|1|K|U|1625
Current chains
- Chain K
- 18S ribosomal RNA
Nearby chains
- Chain 9
- uS14
- Chain II
- uS13
- Chain PP
- eS19
- Chain WW
- uS19
Coloring options: