HL_6R6P_024

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUCUCCAGUCCG

Length

13 nucleotides

Bulged bases

6R6P|1|5|C|1437, 6R6P|1|5|U|1438, 6R6P|1|5|C|1439

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6P_024 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3183

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6R6P|1|5|C|1436
6R6P|1|5|C|1437
6R6P|1|5|U|1438
6R6P|1|5|C|1439
6R6P|1|5|U|1440
6R6P|1|5|C|1441
6R6P|1|5|C|1442
6R6P|1|5|A|1443
6R6P|1|5|G|1444
6R6P|1|5|U|1445
6R6P|1|5|C|1446
6R6P|1|5|C|1447
6R6P|1|5|G|1448

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

uL4

Chain F

uL30

Chain Q

eL18