HL_6R6P_034
3D structure
- PDB id
- 6R6P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAUGGAAGUCG
- Length
- 11 nucleotides
- Bulged bases
- 6R6P|1|5|U|1980, 6R6P|1|5|G|1981, 6R6P|1|5|A|1984
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6R6P_034 not in the Motif Atlas
- Geometric match to HL_4V88_198
- Geometric discrepancy: 0.2197
- The information below is about HL_4V88_198
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_71121.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 24
Unit IDs
6R6P|1|5|C|1978
6R6P|1|5|A|1979
6R6P|1|5|U|1980
6R6P|1|5|G|1981
6R6P|1|5|G|1982
6R6P|1|5|A|1983
6R6P|1|5|A|1984
6R6P|1|5|G|1985
6R6P|1|5|U|1986
6R6P|1|5|C|1987
6R6P|1|5|G|1988
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain I
- Ribosomal protein L10 (Predicted)
- Chain t
- Ribosomal protein L12
Coloring options: