HL_6R6P_088

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

6R6P|1|K|U|161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6P_088 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.2208

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6R6P|1|K|G|156
6R6P|1|K|U|157
6R6P|1|K|A|158
6R6P|1|K|A|159
6R6P|1|K|U|160
6R6P|1|K|U|161
6R6P|1|K|C|162

Current chains

Chain K

18S rRNA

Nearby chains

Chain NN

eS24

Chain z

40S ribosomal protein S6