HL_6R6P_092

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

6R6P|1|K|G|385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6P_092 not in the Motif Atlas

Geometric match to HL_6UFM_001

Geometric discrepancy: 0.2421

The information below is about HL_6UFM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_04642.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6R6P|1|K|G|377
6R6P|1|K|U|378
6R6P|1|K|C|379
6R6P|1|K|G|380
6R6P|1|K|C|381
6R6P|1|K|C|382
6R6P|1|K|G|383
6R6P|1|K|U|384
6R6P|1|K|G|385
6R6P|1|K|C|386
6R6P|1|K|C|387

Current chains

Chain K

18S rRNA

Nearby chains

Chain CC

40S ribosomal protein S8

Chain EE

Ribosomal protein S11