HL_6R6P_096

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

6R6P|1|K|A|500, 6R6P|1|K|C|502, 6R6P|1|K|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6P_096 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.3553

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6R6P|1|K|C|498
6R6P|1|K|G|499
6R6P|1|K|A|500
6R6P|1|K|C|501
6R6P|1|K|C|502
6R6P|1|K|C|503
6R6P|1|K|G|504

Current chains

Chain K

18S rRNA

Nearby chains

Chain NN

eS24

Chain x

40S ribosomal protein S4