HL_6R7Q_004
3D structure
- PDB id
- 6R7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with Sec61.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAGCUGUAG
- Length
- 9 nucleotides
- Bulged bases
- 6R7Q|1|3|C|16, 6R7Q|1|3|U|18, 6R7Q|1|3|G|19, 6R7Q|1|3|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6R7Q_004 not in the Motif Atlas
- Homologous match to HL_4TUE_033
- Geometric discrepancy: 0.1569
- The information below is about HL_4TUE_033
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_93616.2
- Basepair signature
- cWW-cWS-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
6R7Q|1|3|C|13
6R7Q|1|3|A|14
6R7Q|1|3|G|15
6R7Q|1|3|C|16
6R7Q|1|3|U|18
6R7Q|1|3|G|19
6R7Q|1|3|U|20
6R7Q|1|3|A|21
6R7Q|1|3|G|22
Current chains
- Chain 3
- E-tRNA
Nearby chains
- Chain u
- 40S ribosomal protein S3a
Coloring options: