HL_6R7Q_013

3D structure

PDB id

6R7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with Sec61.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGUGAGGC

Length

9 nucleotides

Bulged bases

6R7Q|1|5|G|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R7Q_013 not in the Motif Atlas

Homologous match to HL_5TBW_007

Geometric discrepancy: 0.1222

The information below is about HL_5TBW_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

6R7Q|1|5|G|230
6R7Q|1|5|U|231
6R7Q|1|5|G|232
6R7Q|1|5|U|233
6R7Q|1|5|G|234
6R7Q|1|5|A|235
6R7Q|1|5|G|236
6R7Q|1|5|G|237
6R7Q|1|5|C|238

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain C

uL4

Chain Y

Ribosomal protein L26