HL_6R7Q_033
3D structure
- PDB id
- 6R7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with Sec61.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGAUGAAC
- Length
- 8 nucleotides
- Bulged bases
- 6R7Q|1|5|A|1891, 6R7Q|1|5|A|1892
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6R7Q_033 not in the Motif Atlas
- Homologous match to HL_5TBW_026
- Geometric discrepancy: 0.1812
- The information below is about HL_5TBW_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_44398.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
6R7Q|1|5|G|1886
6R7Q|1|5|G|1887
6R7Q|1|5|A|1888
6R7Q|1|5|U|1889
6R7Q|1|5|G|1890
6R7Q|1|5|A|1891
6R7Q|1|5|A|1892
6R7Q|1|5|C|1893
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain F
- uL30
- Chain e
- eL32
- Chain f
- eL33
Coloring options: