HL_6R7Q_094

3D structure

PDB id

6R7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with Sec61.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

6R7Q|1|K|A|500

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R7Q_094 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.255

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6R7Q|1|K|C|498
6R7Q|1|K|G|499
6R7Q|1|K|A|500
6R7Q|1|K|C|501
6R7Q|1|K|C|502
6R7Q|1|K|C|503
6R7Q|1|K|G|504

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain NN

eS24

Chain x

40S ribosomal protein S4