HL_6R84_018

3D structure

PDB id

6R84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUCUUC

Length

6 nucleotides

Bulged bases

6R84|1|1|C|765

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R84_018 not in the Motif Atlas

Homologous match to HL_5TBW_018

Geometric discrepancy: 0.3082

The information below is about HL_5TBW_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84570.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

6R84|1|1|G|763
6R84|1|1|U|764
6R84|1|1|C|765
6R84|1|1|U|766
6R84|1|1|U|767
6R84|1|1|C|768

Current chains

Chain 1

25S rRNA

Nearby chains

Chain N

60S ribosomal protein L13-A

Chain k

60S ribosomal protein L36-A