HL_6R86_021

3D structure

PDB id

6R86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1-60S ribosomal subunit complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

6R86|1|1|A|913, 6R86|1|1|G|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R86_021 not in the Motif Atlas

Homologous match to HL_5TBW_021

Geometric discrepancy: 0.1116

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6R86|1|1|G|910
6R86|1|1|C|911
6R86|1|1|G|912
6R86|1|1|A|913
6R86|1|1|A|914
6R86|1|1|A|915
6R86|1|1|G|916
6R86|1|1|A|917
6R86|1|1|C|918

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L2-A

Chain l

60S ribosomal protein L37-A

Chain p

60S ribosomal protein L15-A