HL_6R86_022

3D structure

PDB id

6R86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1-60S ribosomal subunit complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

6R86|1|1|C|959, 6R86|1|1|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R86_022 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.1316

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6R86|1|1|C|958
6R86|1|1|C|959
6R86|1|1|U|960
6R86|1|1|C|961
6R86|1|1|A|962
6R86|1|1|G|963

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L42-A

Chain c

60S ribosomal protein L28

Chain d

60S ribosomal protein L29