HL_6R86_039

3D structure

PDB id

6R86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1-60S ribosomal subunit complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R86_039 not in the Motif Atlas

Homologous match to HL_8C3A_039

Geometric discrepancy: 0.5543

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6R86|1|1|C|1759
6R86|1|1|A|1760
6R86|1|1|C|1761
6R86|1|1|C|1762
6R86|1|1|U|1763
6R86|1|1|U|1764
6R86|1|1|U|1765
6R86|1|1|G|1766

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain T

60S ribosomal protein L19-A

Chain W

60S ribosomal protein L22-A