HL_6R86_042

3D structure

PDB id

6R86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1-60S ribosomal subunit complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

6R86|1|1|C|1866

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R86_042 not in the Motif Atlas

Homologous match to HL_5TBW_042

Geometric discrepancy: 0.1123

The information below is about HL_5TBW_042

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6R86|1|1|U|1862
6R86|1|1|G|1863
6R86|1|1|A|1864
6R86|1|1|A|1865
6R86|1|1|C|1866
6R86|1|1|A|1867
6R86|1|1|G|1868

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain T

60S ribosomal protein L19-A