HL_6R86_066

3D structure

PDB id

6R86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1-60S ribosomal subunit complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R86_066 not in the Motif Atlas

Geometric match to HL_3OXE_002

Geometric discrepancy: 0.1402

The information below is about HL_3OXE_002

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37569.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

6R86|1|1|C|3025
6R86|1|1|G|3026
6R86|1|1|A|3027
6R86|1|1|G|3028
6R86|1|1|A|3029
6R86|1|1|G|3030

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 7

60S ribosomal protein L9-A

Chain X

Eukaryotic translation initiation factor 6

Chain o

Ubiquitin-60S ribosomal protein L40