HL_6R87_056
3D structure
- PDB id
- 6R87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UUAAACGAUAACG
- Length
- 13 nucleotides
- Bulged bases
- 6R87|1|1|A|2637, 6R87|1|1|C|2644
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6R87_056 not in the Motif Atlas
- Homologous match to HL_5TBW_055
- Geometric discrepancy: 0.0821
- The information below is about HL_5TBW_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19870.9
- Basepair signature
- cWW-tHH-cWW-tHS-F-F-tWW
- Number of instances in this motif group
- 8
Unit IDs
6R87|1|1|U|2633
6R87|1|1|U|2634
6R87|1|1|A|2635
6R87|1|1|A|2636
6R87|1|1|A|2637
6R87|1|1|C|2638
6R87|1|1|G|2639
6R87|1|1|A|2640
6R87|1|1|U|2641
6R87|1|1|A|2642
6R87|1|1|A|2643
6R87|1|1|C|2644
6R87|1|1|G|2645
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain V
- 60S ribosomal protein L21-A
- Chain d
- 60S ribosomal protein L29
- Chain s
- 60S ribosomal protein L10
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