3D structure

PDB id
6R87 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
UGAUCA
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6R87_067 not in the Motif Atlas
Homologous match to HL_8C3A_067
Geometric discrepancy: 0.1241
The information below is about HL_8C3A_067
Detailed Annotation
Ribsomal LSU H95
Broad Annotation
Ribsomal LSU H95
Motif group
HL_65794.1
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
11

Unit IDs

6R87|1|1|U|3068
6R87|1|1|G|3069
6R87|1|1|A|3070
6R87|1|1|U|3071
6R87|1|1|C|3072
6R87|1|1|A|3073

Current chains

Chain 1
25S rRNA

Nearby chains

Chain T
60S ribosomal protein L19-A
Chain W
60S ribosomal protein L22-A
Chain f
60S ribosomal protein L31-A

Coloring options:


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