HL_6RBD_023

3D structure

PDB id

6RBD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

UUUUUUUAAUGA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RBD_023 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3924

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

6RBD|1|2|U|1054
6RBD|1|2|U|1055
6RBD|1|2|U|1056
6RBD|1|2|U|1057
6RBD|1|2|U|1058
6RBD|1|2|U|1059
6RBD|1|2|U|1060
6RBD|1|2|A|1061
6RBD|1|2|A|1062
6RBD|1|2|U|1063
6RBD|1|2|G|1064
6RBD|1|2|A|1065

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S1-A

Chain R

40S ribosomal protein S17-A

Chain b

40S ribosomal protein S27-A