HL_6RBD_033

3D structure

PDB id

6RBD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

AUUGUAAUUAUU

Length

12 nucleotides

Bulged bases

6RBD|1|2|U|1557, 6RBD|1|2|U|1558, 6RBD|1|2|A|1559

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RBD_033 not in the Motif Atlas

Homologous match to HL_4V88_219

Geometric discrepancy: 0.1792

The information below is about HL_4V88_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03273.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

3

Unit IDs

6RBD|1|2|A|1550
6RBD|1|2|U|1551
6RBD|1|2|U|1552
6RBD|1|2|G|1553
6RBD|1|2|U|1554
6RBD|1|2|A|1555
6RBD|1|2|A|1556
6RBD|1|2|U|1557
6RBD|1|2|U|1558
6RBD|1|2|A|1559
6RBD|1|2|U|1560
6RBD|1|2|U|1561

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain P

40S ribosomal protein S15

Chain S

40S ribosomal protein S18-A

Chain T

40S ribosomal protein S19-A