HL_6RBD_036

3D structure

PDB id

6RBD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GUGAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RBD_036 not in the Motif Atlas

Geometric match to HL_3SKI_003

Geometric discrepancy: 0.3581

The information below is about HL_3SKI_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97696.1

Basepair signature

cWW-F-F

Number of instances in this motif group

6

Unit IDs

6RBD|1|2|G|1778
6RBD|1|2|U|1779
6RBD|1|2|G|1780
6RBD|1|2|A|1781
6RBD|1|2|A|1782
6RBD|1|2|C|1783

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain y

Dimethyladenosine transferase