HL_6RBE_016

3D structure

PDB id

6RBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCUAACCUUGAGUCCUUGUGGCUCUUGGCGAAC

Length

33 nucleotides

Bulged bases

6RBE|1|2|U|718, 6RBE|1|2|U|719, 6RBE|1|2|U|721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6RBE|1|2|G|703
6RBE|1|2|C|704
6RBE|1|2|U|705
6RBE|1|2|A|706
6RBE|1|2|A|707
6RBE|1|2|C|708
6RBE|1|2|C|709
6RBE|1|2|U|710
6RBE|1|2|U|711
6RBE|1|2|G|712
6RBE|1|2|A|713
6RBE|1|2|G|714
6RBE|1|2|U|715
6RBE|1|2|C|716
6RBE|1|2|C|717
6RBE|1|2|U|718
6RBE|1|2|U|719
6RBE|1|2|G|720
6RBE|1|2|U|721
6RBE|1|2|G|722
6RBE|1|2|G|723
6RBE|1|2|C|724
6RBE|1|2|U|725
6RBE|1|2|C|726
6RBE|1|2|U|727
6RBE|1|2|U|728
6RBE|1|2|G|729
6RBE|1|2|G|730
6RBE|1|2|C|731
6RBE|1|2|G|732
6RBE|1|2|A|733
6RBE|1|2|A|734
6RBE|1|2|C|735

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4-A