6RBE Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6RBE_001 | No text annotation | ||
| HL_6RBE_002 | No text annotation | ||
| HL_6RBE_003 | GNRA related | ||
| HL_6RBE_004 | No text annotation | ||
| HL_6RBE_005 | UNCG | ||
| HL_6RBE_006 | T-loop with 1 bulged base | ||
| HL_6RBE_007 | Mini UNCG | ||
| HL_6RBE_008 | GNRA related | ||
| HL_6RBE_009 | No text annotation | ||
| HL_6RBE_010 | No text annotation | ||
| HL_6RBE_011 | UNCG | ||
| HL_6RBE_012 | No text annotation | ||
| HL_6RBE_013 | No text annotation | ||
| HL_6RBE_037 | No text annotation | ||
| HL_6RBE_014 | No text annotation | ||
| HL_6RBE_015 | GNRA variation | ||
| HL_6RBE_016 | No text annotation | ||
| HL_6RBE_017 | No text annotation | ||
| HL_6RBE_018 | No text annotation | ||
| HL_6RBE_019 | Pseudoknot geometry | ||
| HL_6RBE_020 | No text annotation | ||
| HL_6RBE_021 | GNRA | ||
| HL_6RBE_022 | No text annotation | ||
| HL_6RBE_023 | No text annotation | ||
| HL_6RBE_024 | GNRA | ||
| HL_6RBE_025 | GNRA | ||
| HL_6RBE_026 | No text annotation | ||
| HL_6RBE_027 | Anticodon loop related | ||
| HL_6RBE_028 | GNRA | ||
| HL_6RBE_029 | No text annotation | ||
| HL_6RBE_030 | No text annotation | ||
| HL_6RBE_031 | GNRA | ||
| HL_6RBE_032 | GNRA | ||
| HL_6RBE_033 | No text annotation | ||
| HL_6RBE_034 | No text annotation | ||
| HL_6RBE_035 | No text annotation | ||
| HL_6RBE_036 | GNRA variation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6RBE_001 | Single bulged C | ||
| IL_6RBE_002 | Isolated non-canonical cWW pair | ||
| IL_6RBE_093 | No text annotation | ||
| IL_6RBE_003 | No text annotation | ||
| IL_6RBE_004 | Minor groove platform | ||
| IL_6RBE_005 | No text annotation | ||
| IL_6RBE_006 | No text annotation | ||
| IL_6RBE_007 | Tandem non-canonical cWW pairs | ||
| IL_6RBE_008 | Multiple bulged bases | ||
| IL_6RBE_009 | No text annotation | ||
| IL_6RBE_010 | tWH-tWH-tHW-tHW | ||
| IL_6RBE_011 | Isolated cWH basepair | ||
| IL_6RBE_012 | Double sheared | ||
| IL_6RBE_013 | Major groove platform with extra cWW | ||
| IL_6RBE_014 | Isolated non-canonical cWW pair | ||
| IL_6RBE_015 | Isolated non-canonical cWW pair | ||
| IL_6RBE_016 | Single bulged A | ||
| IL_6RBE_017 | No text annotation | ||
| IL_6RBE_018 | Single bulged U | ||
| IL_6RBE_019 | Kink-turn with non-sequential stacking | ||
| IL_6RBE_020 | No text annotation | ||
| IL_6RBE_021 | No text annotation | ||
| IL_6RBE_022 | Isolated cWH basepair | ||
| IL_6RBE_023 | Isolated near basepair | ||
| IL_6RBE_024 | Single bulged U | ||
| IL_6RBE_025 | C-loop | ||
| IL_6RBE_026 | Single bulged G | ||
| IL_6RBE_094 | No text annotation | ||
| IL_6RBE_027 | No text annotation | ||
| IL_6RBE_028 | Minor groove platform | ||
| IL_6RBE_029 | Minor groove platform | ||
| IL_6RBE_030 | SSU/LSU pseudoknot | ||
| IL_6RBE_031 | Single bulged U | ||
| IL_6RBE_032 | Kink-turn related | ||
| IL_6RBE_033 | No text annotation | ||
| IL_6RBE_034 | Isolated non-canonical cWW pair | ||
| IL_6RBE_035 | tSH-tHW-tHS | ||
| IL_6RBE_036 | Isolated non-canonical cWW pair | ||
| IL_6RBE_037 | No text annotation | ||
| IL_6RBE_038 | Major groove minor groove platform with extra cWW | ||
| IL_6RBE_084 | Major groove minor groove platform; mini C-loop | ||
| IL_6RBE_039 | Isolated non-canonical cWW pair | ||
| IL_6RBE_040 | No text annotation | ||
| IL_6RBE_085 | Isolated non-canonical cWW pair | ||
| IL_6RBE_041 | Major groove platform; stack outside cWW | ||
| IL_6RBE_086 | Isolated non-canonical cWW pair | ||
| IL_6RBE_042 | Tandem non-canonical cWW pairs | ||
| IL_6RBE_095 | Single bulged U | ||
| IL_6RBE_087 | Isolated non-canonical cWW pair | ||
| IL_6RBE_043 | Tandem non-canonical cWW pairs | ||
| IL_6RBE_044 | Tandem non-canonical cWW pairs | ||
| IL_6RBE_045 | Isolated non-canonical cWW pair | ||
| IL_6RBE_046 | Other IL | ||
| IL_6RBE_047 | tSH-tHW-tHS | ||
| IL_6RBE_048 | No text annotation | ||
| IL_6RBE_049 | Tandem non-canonical cWW pairs | ||
| IL_6RBE_050 | Single bulged U | ||
| IL_6RBE_051 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_6RBE_052 | Single bulged G | ||
| IL_6RBE_053 | C-loop | ||
| IL_6RBE_054 | Isolated non-canonical cWW pair | ||
| IL_6RBE_055 | Minor groove platform | ||
| IL_6RBE_056 | Isolated non-canonical cWW pair | ||
| IL_6RBE_088 | No text annotation | ||
| IL_6RBE_089 | No text annotation | ||
| IL_6RBE_057 | No text annotation | ||
| IL_6RBE_096 | No text annotation | ||
| IL_6RBE_058 | No text annotation | ||
| IL_6RBE_059 | No text annotation | ||
| IL_6RBE_060 | Single bulged U | ||
| IL_6RBE_061 | Tandem non-canonical cWW pairs | ||
| IL_6RBE_090 | Isolated cWS basepair | ||
| IL_6RBE_091 | No text annotation | ||
| IL_6RBE_062 | Minor groove platform with extra cWW | ||
| IL_6RBE_063 | Single bulged A | ||
| IL_6RBE_064 | Isolated cWH basepair | ||
| IL_6RBE_065 | Minor groove platform | ||
| IL_6RBE_066 | Isolated non-canonical cWW pair | ||
| IL_6RBE_067 | Minor groove platform | ||
| IL_6RBE_097 | Isolated non-canonical cWW pair | ||
| IL_6RBE_068 | Tandem non-canonical cWW pairs | ||
| IL_6RBE_069 | Major groove platform; stack outside cWW | ||
| IL_6RBE_070 | No text annotation | ||
| IL_6RBE_071 | 180 degree turn | ||
| IL_6RBE_072 | Tandem non-canonical cWW pairs | ||
| IL_6RBE_073 | No text annotation | ||
| IL_6RBE_074 | Isolated non-canonical cWW pair | ||
| IL_6RBE_075 | Tandem non-canonical cWW pairs | ||
| IL_6RBE_076 | Isolated non-canonical cWW pair | ||
| IL_6RBE_092 | No text annotation | ||
| IL_6RBE_077 | No text annotation | ||
| IL_6RBE_078 | Isolated non-canonical cWW pair | ||
| IL_6RBE_079 | Double sheared | ||
| IL_6RBE_080 | Isolated non-canonical cWW pair | ||
| IL_6RBE_081 | Tandem non-canonical cWW pairs | ||
| IL_6RBE_082 | Triple sheared | ||
| IL_6RBE_083 | Tandem non-canonical cWW pairs |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6RBE_012 | No text annotation | ||
| J3_6RBE_017 | No text annotation | ||
| J3_6RBE_013 | No text annotation | ||
| J3_6RBE_001 | No text annotation | ||
| J3_6RBE_014 | No text annotation | ||
| J3_6RBE_015 | No text annotation | ||
| J3_6RBE_018 | No text annotation | ||
| J3_6RBE_002 | No text annotation | ||
| J3_6RBE_003 | No text annotation | ||
| J3_6RBE_004 | No text annotation | ||
| J3_6RBE_005 | No text annotation | ||
| J3_6RBE_006 | No text annotation | ||
| J3_6RBE_007 | No text annotation | ||
| J3_6RBE_008 | No text annotation | ||
| J3_6RBE_019 | No text annotation | ||
| J3_6RBE_009 | No text annotation | ||
| J3_6RBE_010 | No text annotation | ||
| J3_6RBE_016 | No text annotation | ||
| J3_6RBE_011 | No text annotation | ||
| J4_6RBE_001 | No text annotation | ||
| J4_6RBE_002 | No text annotation | ||
| J5_6RBE_001 | No text annotation | ||
| J5_6RBE_002 | No text annotation | ||
| J5_6RBE_003 | No text annotation | ||
| J5_6RBE_004 | No text annotation | ||
| J5_6RBE_006 | No text annotation | ||
| J5_6RBE_005 | No text annotation |
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