HL_6RBE_017

3D structure

PDB id

6RBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

6RBE|1|2|G|765

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RBE_017 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.1135

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

6RBE|1|2|U|764
6RBE|1|2|G|765
6RBE|1|2|U|766
6RBE|1|2|U|767
6RBE|1|2|C|768
6RBE|1|2|A|769
6RBE|1|2|A|770
6RBE|1|2|A|771
6RBE|1|2|G|772

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4-A

Chain J

40S ribosomal protein S9-A

Chain Y

40S ribosomal protein S24-A