HL_6RBE_020

3D structure

PDB id

6RBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAGUGAAAUUCUUGG

Length

16 nucleotides

Bulged bases

6RBE|1|2|U|912, 6RBE|1|2|G|913

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6RBE|1|2|C|890
6RBE|1|2|A|891
6RBE|1|2|A|892
6RBE|1|2|G|902
6RBE|1|2|U|903
6RBE|1|2|G|904
6RBE|1|2|A|905
6RBE|1|2|A|906
6RBE|1|2|A|907
6RBE|1|2|U|908
6RBE|1|2|U|909
6RBE|1|2|C|910
6RBE|1|2|U|911
6RBE|1|2|U|912
6RBE|1|2|G|913
6RBE|1|2|G|922

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S1-A

Chain O

40S ribosomal protein S14-A