HL_6RBE_023

3D structure

PDB id

6RBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RBE_023 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3755

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6RBE|1|2|U|1055
6RBE|1|2|U|1056
6RBE|1|2|U|1057
6RBE|1|2|U|1058
6RBE|1|2|U|1059
6RBE|1|2|U|1060
6RBE|1|2|A|1061
6RBE|1|2|A|1062
6RBE|1|2|U|1063
6RBE|1|2|G|1064

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S1-A

Chain b

40S ribosomal protein S27-A