HL_6RI5_021
3D structure
- PDB id
- 6RI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GCGAAAGAC
- Length
- 9 nucleotides
- Bulged bases
- 6RI5|1|A|A|913, 6RI5|1|A|G|916
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6RI5_021 not in the Motif Atlas
- Homologous match to HL_5TBW_021
- Geometric discrepancy: 0.112
- The information below is about HL_5TBW_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56443.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
6RI5|1|A|G|910
6RI5|1|A|C|911
6RI5|1|A|G|912
6RI5|1|A|A|913
6RI5|1|A|A|914
6RI5|1|A|A|915
6RI5|1|A|G|916
6RI5|1|A|A|917
6RI5|1|A|C|918
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain B
- 60S ribosomal protein L2-A
- Chain O
- 60S ribosomal protein L15-A
- Chain i
- 60S ribosomal protein L37-A
- Chain z
- Cytoplasmic 60S subunit biogenesis factor REH1
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