HL_6RI5_050

3D structure

PDB id

6RI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

6RI5|1|A|U|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RI5_050 not in the Motif Atlas

Homologous match to HL_5TBW_050

Geometric discrepancy: 0.1058

The information below is about HL_5TBW_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6RI5|1|A|U|2292
6RI5|1|A|C|2293
6RI5|1|A|U|2294
6RI5|1|A|A|2295
6RI5|1|A|A|2296
6RI5|1|A|U|2297
6RI5|1|A|U|2298
6RI5|1|A|A|2299
6RI5|1|A|G|2300

Current chains

Chain A

25S RNA

Nearby chains

Chain L

60S ribosomal protein L23-A

Chain o

Large subunit GTPase 1

Chain w

60S ribosomal export protein NMD3