HL_6RI5_069

3D structure

PDB id

6RI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCUAC

Length

5 nucleotides

Bulged bases

6RI5|1|A|A|3223

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RI5_069 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.3987

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6RI5|1|A|G|3220
6RI5|1|A|C|3221
6RI5|1|A|U|3222
6RI5|1|A|A|3223
6RI5|1|A|C|3265

Current chains

Chain A

25S RNA

Nearby chains

Chain G

60S ribosomal protein L6-A