HL_6RJA_002

3D structure

PDB id

6RJA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of St1Cas9-sgRNA-tDNA20-AcrIIA6 dimeric assembly.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUCA

Length

4 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RJA_002 not in the Motif Atlas

Geometric match to HL_6M0X_002

Geometric discrepancy: 0.0981

The information below is about HL_6M0X_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.6

Basepair signature

cWW-F

Number of instances in this motif group

11

Unit IDs

6RJA|1|G|U|73
6RJA|1|G|U|74
6RJA|1|G|C|75
6RJA|1|G|A|76

Current chains

Chain G

RNA (78-MER)

Nearby chains

Chain B

AcrIIA6

Chain F

CRISPR-associated endonuclease Cas9