HL_6RM3_014

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAAG

Length

4 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RM3_014 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.1412

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6RM3|1|L50|C|570
6RM3|1|L50|A|571
6RM3|1|L50|A|574
6RM3|1|L50|G|575

Current chains

Chain L50

23S rRNA

Nearby chains

Chain S60

Small subunit ribosomal RNA; SSU rRNA

Chain SL0

uS17

Chain SN0

uS15