HL_6RM3_039

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUACUAUGAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RM3_039 not in the Motif Atlas

Homologous match to HL_5TBW_049

Geometric discrepancy: 0.1543

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6RM3|1|L50|G|1612
6RM3|1|L50|U|1613
6RM3|1|L50|A|1614
6RM3|1|L50|C|1616
6RM3|1|L50|U|1617
6RM3|1|L50|A|1618
6RM3|1|L50|U|1619
6RM3|1|L50|G|1620
6RM3|1|L50|A|1621
6RM3|1|L50|C|1622

Current chains

Chain L50

23S rRNA

Nearby chains

Chain S60

Small subunit ribosomal RNA; SSU rRNA

Chain SEE

eS30