HL_6RM3_048

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUUCAUUAU

Length

9 nucleotides

Bulged bases

6RM3|1|L50|U|2048

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RM3_048 not in the Motif Atlas

Homologous match to HL_5TBW_060

Geometric discrepancy: 0.4908

The information below is about HL_5TBW_060

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

6RM3|1|L50|A|2047
6RM3|1|L50|U|2048
6RM3|1|L50|U|2049
6RM3|1|L50|C|2050
6RM3|1|L50|A|2051
6RM3|1|L50|U|2052
6RM3|1|L50|U|2053
6RM3|1|L50|A|2054
6RM3|1|L50|U|2055

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LAA

uL15

Chain LII

eL36

Chain LOO

eL42