HL_6RM3_088

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUAAUUG

Length

7 nucleotides

Bulged bases

6RM3|1|L50|U|1657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RM3_088 not in the Motif Atlas

Geometric match to HL_8VTW_051

Geometric discrepancy: 0.3733

The information below is about HL_8VTW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

6RM3|1|L50|U|1652
6RM3|1|L50|U|1653
6RM3|1|L50|A|1654
6RM3|1|L50|A|1655
6RM3|1|L50|U|1656
6RM3|1|L50|U|1657
6RM3|1|L50|G|1658

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LV0

uL14

Chain S60

Small subunit ribosomal RNA; SSU rRNA