HL_6RXU_004

3D structure

PDB id

6RXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CACCGCG

Length

7 nucleotides

Bulged bases

6RXU|1|C1|C|167, 6RXU|1|C1|C|168

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RXU_004 not in the Motif Atlas

Geometric match to HL_5J7L_179

Geometric discrepancy: 0.3138

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

6RXU|1|C1|C|165
6RXU|1|C1|A|166
6RXU|1|C1|C|167
6RXU|1|C1|C|168
6RXU|1|C1|G|169
6RXU|1|C1|C|170
6RXU|1|C1|G|171

Current chains

Chain C1

35S rRNA

Nearby chains