HL_6RXU_005
3D structure
- PDB id
- 6RXU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GAAUACC
- Length
- 7 nucleotides
- Bulged bases
- 6RXU|1|C1|A|221, 6RXU|1|C1|A|223, 6RXU|1|C1|C|224
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6RXU_005 not in the Motif Atlas
- Geometric match to HL_5TBW_006
- Geometric discrepancy: 0.1504
- The information below is about HL_5TBW_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_71121.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 24
Unit IDs
6RXU|1|C1|G|219
6RXU|1|C1|A|220
6RXU|1|C1|A|221
6RXU|1|C1|U|222
6RXU|1|C1|A|223
6RXU|1|C1|C|224
6RXU|1|C1|C|225
Current chains
- Chain C1
- 35S rRNA
Nearby chains
- Chain CI
- Bms1
- Chain Cj
- 40S ribosomal protein S16-like protein
- Chain UK
- U3 small nucleolar RNA-associated protein 11
- Chain UZ
- Utp30
Coloring options: