HL_6RXU_010

3D structure

PDB id

6RXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UACGCUA

Length

7 nucleotides

Bulged bases

6RXU|1|C1|C|498, 6RXU|1|C1|G|499

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RXU_010 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.2636

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6RXU|1|C1|U|496
6RXU|1|C1|A|497
6RXU|1|C1|C|498
6RXU|1|C1|G|499
6RXU|1|C1|C|500
6RXU|1|C1|U|501
6RXU|1|C1|A|502

Current chains

Chain C1

35S rRNA

Nearby chains

Chain UF

Utp6