HL_6RXU_013

3D structure

PDB id

6RXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

6RXU|1|C1|C|776

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RXU_013 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.3772

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6RXU|1|C1|C|773
6RXU|1|C1|U|774
6RXU|1|C1|U|775
6RXU|1|C1|C|776
6RXU|1|C1|G|777
6RXU|1|C1|G|778

Current chains

Chain C1

35S rRNA

Nearby chains

Chain UT

Utp20