HL_6RXU_018

3D structure

PDB id

6RXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUAGGG

Length

6 nucleotides

Bulged bases

6RXU|1|C1|U|953

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RXU_018 not in the Motif Atlas

Homologous match to HL_4V88_194

Geometric discrepancy: 0.4366

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

6RXU|1|C1|U|952
6RXU|1|C1|U|953
6RXU|1|C1|A|954
6RXU|1|C1|G|955
6RXU|1|C1|G|956
6RXU|1|C1|G|957

Current chains

Chain C1

35S rRNA

Nearby chains

Chain CY

U3 small nucleolar ribonucleoprotein protein lcp5-like protein

Chain Cb

40S ribosomal protein S4