HL_6RXU_025

3D structure

PDB id

6RXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCUCACCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RXU_025 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.283

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6RXU|1|C1|C|1245
6RXU|1|C1|C|1246
6RXU|1|C1|U|1247
6RXU|1|C1|C|1248
6RXU|1|C1|A|1249
6RXU|1|C1|C|1250
6RXU|1|C1|C|1251
6RXU|1|C1|G|1252

Current chains

Chain C1

35S rRNA

Nearby chains