HL_6RXU_026

3D structure

PDB id

6RXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RXU_026 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.3922

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6RXU|1|C1|A|1485
6RXU|1|C1|G|1486
6RXU|1|C1|G|1487
6RXU|1|C1|U|1488
6RXU|1|C1|G|1489
6RXU|1|C1|A|1490
6RXU|1|C1|A|1491
6RXU|1|C1|A|1492
6RXU|1|C1|U|1493
6RXU|1|C1|U|1494

Current chains

Chain C1

35S rRNA

Nearby chains

Chain CP

KRR1 small subunit processome component

Chain Ca

40S ribosomal protein S1

Chain Ci

40S ribosomal protein S14-like protein

Chain UM

Utp13