HL_6RXU_029

3D structure

PDB id

6RXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RXU_029 not in the Motif Atlas

Homologous match to HL_4V88_218

Geometric discrepancy: 0.4639

The information below is about HL_4V88_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6RXU|1|C1|C|2084
6RXU|1|C1|G|2085
6RXU|1|C1|A|2086
6RXU|1|C1|G|2087
6RXU|1|C1|A|2088
6RXU|1|C1|G|2089

Current chains

Chain C1

35S rRNA

Nearby chains

Chain CI

Bms1

Chain UK

U3 small nucleolar RNA-associated protein 11

Chain UZ

Utp30