HL_6RZZ_044

3D structure

PDB id

6RZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGGUCG

Length

7 nucleotides

Bulged bases

6RZZ|1|A|G|1952, 6RZZ|1|A|U|1955

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RZZ_044 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2917

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6RZZ|1|A|C|1951
6RZZ|1|A|G|1952
6RZZ|1|A|G|1953
6RZZ|1|A|G|1954
6RZZ|1|A|U|1955
6RZZ|1|A|C|2094
6RZZ|1|A|G|2095

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L19-A