HL_6S05_012

3D structure

PDB id

6S05 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUGCCUCGGUAAG

Length

14 nucleotides

Bulged bases

6S05|1|A|G|542, 6S05|1|A|U|545, 6S05|1|A|C|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S05_012 not in the Motif Atlas

Homologous match to HL_8P9A_124

Geometric discrepancy: 0.3161

The information below is about HL_8P9A_124

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S05|1|A|C|539
6S05|1|A|U|540
6S05|1|A|U|541
6S05|1|A|G|542
6S05|1|A|C|543
6S05|1|A|C|544
6S05|1|A|U|545
6S05|1|A|C|546
6S05|1|A|G|547
6S05|1|A|G|548
6S05|1|A|U|549
6S05|1|A|A|550
6S05|1|A|A|551
6S05|1|A|G|552

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain S

60S ribosomal protein L20-A