6S05 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6S05_001 | 1/A/31:53 | No text annotation | ||
| HL_6S05_002 | 1/A/69:74 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_6S05_003 | 1/A/90:96 | No text annotation | homologous HL_5TBW_003 NA | |
| HL_6S05_004 | 1/A/132:136 | No text annotation | homologous HL_8C3A_004 NA | |
| HL_6S05_075 | 1/A/192:203 | No text annotation | ||
| HL_6S05_005 | 1/A/194:201 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_005 NA | |
| HL_6S05_006 | 1/A/208:212 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_6S05_007 | 1/A/216:224 | T-loop with unstacked turn | homologous HL_5TBW_007 NA | |
| HL_6S05_008 | 1/A/278:287 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_6S05_009 | 1/A/303:312 | Pseudoknot geometry | geometric HL_4QLM_002 HL_00911.1 | |
| HL_6S05_010 | 1/A/357:362 | GNRA | homologous HL_8C3A_010 NA | |
| HL_6S05_011 | 1/A/382:387 | GNRA | homologous HL_8C3A_011 NA | |
| HL_6S05_012 | 1/A/539:552 | No text annotation | homologous HL_8P9A_124 NA | |
| HL_6S05_013 | 1/A/599:604 | GNRA | homologous HL_5TBW_013 NA | |
| HL_6S05_085 | 1/A/640:649 | T-loop with 2 stacked bulged bases | homologous HL_8CRE_013 NA | |
| HL_6S05_015 | 1/A/686:694 | No text annotation | homologous HL_8C3A_015 NA | |
| HL_6S05_016 | 1/A/707:712 | GNRA | homologous HL_5TBW_016 NA | |
| HL_6S05_017 | 1/A/732:737 | GNRA | homologous HL_5TBW_017 NA | |
| HL_6S05_018 | 1/A/763:768 | No text annotation | geometric HL_5TBW_018 NA | |
| HL_6S05_019 | 1/A/844:849 | GNRA | geometric HL_4V88_207 NA | |
| HL_6S05_020 | 1/A/876:885 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_6S05_021 | 1/A/910:918 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_6S05_022 | 1/A/958:963 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_6S05_076 | 1/A/1018:1034 | No text annotation | ||
| HL_6S05_023 | 1/A/1023:1029 | No text annotation | ||
| HL_6S05_024 | 1/A/1074:1084 | No text annotation | ||
| HL_6S05_077 | 1/A/1122:1136 | No text annotation | ||
| HL_6S05_025 | 1/A/1125:1133 | tRNA D-loop | geometric HL_7UQ6_001 NA | |
| HL_6S05_026 | 1/A/1148:1155 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_6S05_027 | 1/A/1239:1249 | No text annotation | homologous HL_5TBW_027 NA | |
| HL_6S05_086 | 1/A/1267:1274 | GNRA wlth tandem sheared | homologous HL_8P9A_140 HL_98423.1 | |
| HL_6S05_029 | 1/A/1347:1357 | No text annotation | ||
| HL_6S05_030 | 1/A/1403:1408 | GNRA | homologous HL_8C3A_030 NA | |
| HL_6S05_031 | 1/A/1462:1470 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_031 NA | |
| HL_6S05_032 | 1/A/1506:1512 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_6S05_033 | 1/A/1544:1549 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_6S05_034 | 1/A/1565:1574 | No text annotation | ||
| HL_6S05_087 | 1/A/1599:1608 | No text annotation | homologous HL_8P9A_146 HL_77449.1 | |
| HL_6S05_036 | 1/A/1634:1639 | GNRA | homologous HL_5TBW_036 NA | |
| HL_6S05_078 | 1/A/1680:1688 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_6S05_038 | 1/A/1719:1725 | No text annotation | homologous HL_5TBW_038 NA | |
| HL_6S05_039 | 1/A/1759:1766 | No text annotation | geometric HL_2Y9H_005 HL_51020.1 | |
| HL_6S05_040 | 1/A/1792:1796 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_6S05_041 | 1/A/1844:1851 | No text annotation | homologous HL_8C3A_041 NA | |
| HL_6S05_042 | 1/A/1862:1868 | GNRA | homologous HL_5TBW_042 NA | |
| HL_6S05_043 | 1/A/1923:1928 | UNCG | homologous HL_5TBW_043 NA | |
| HL_6S05_045 | 1/A/2135:2145 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_6S05_046 | 1/A/2164:2170 | GNRA | homologous HL_8C3A_047 NA | |
| HL_6S05_047 | 1/A/2220:2225 | GNRA | homologous HL_8C3A_048 NA | |
| HL_6S05_048 | 1/A/2254:2262 | No text annotation | ||
| HL_6S05_049 | 1/A/2292:2300 | No text annotation | homologous HL_5TBW_050 NA | |
| HL_6S05_050 | 1/A/2369:2378 | No text annotation | homologous HL_5TBW_051 NA | |
| HL_6S05_051 | 1/A/2469:2476 | No text annotation | geometric HL_8C3A_039 NA | |
| HL_6S05_052 | 1/A/2567:2574 | No text annotation | ||
| HL_6S05_053 | 1/A/2616:2624 | No text annotation | homologous HL_5TBW_054 NA | |
| HL_6S05_054 | 1/A/2633:2645 | No text annotation | homologous HL_8C3A_056 NA | |
| HL_6S05_055 | 1/A/2673:2681 | No text annotation | homologous HL_5TBW_056 NA | |
| HL_6S05_056 | 1/A/2693:2700 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_6S05_057 | 1/A/2724:2732 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_6S05_058 | 1/A/2744:2749 | GNRA | homologous HL_8C3A_060 NA | |
| HL_6S05_059 | 1/A/2776:2784 | Pseudoknot geometry | homologous HL_8C3A_061 NA | |
| HL_6S05_060 | 1/A/2840:2848 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_6S05_061 | 1/A/2897:2904 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_6S05_082 | 1/A/2918:2928 | No text annotation | ||
| HL_6S05_062 | 1/A/2920:2926 | No text annotation | geometric HL_5TBW_063 NA | |
| HL_6S05_063 | 1/A/2963:2968 | GNRA | homologous HL_8C3A_065 NA | |
| HL_6S05_064 | 1/A/3025:3030 | GNRA related | geometric HL_5J7L_179 NA | |
| HL_6S05_065 | 1/A/3068:3073 | Ribsomal LSU H95 | homologous HL_5TBW_066 NA | |
| HL_6S05_066 | 1/A/3110:3124 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_6S05_067 | 1/A/3194:3197 | No text annotation | geometric HL_5TBW_068 NA | |
| HL_6S05_068 | 1/A/3300:3314 | No text annotation | ||
| HL_6S05_069 | 1/A/3349:3356 | No text annotation | ||
| HL_6S05_088 | 1/x/32:45 | No text annotation | homologous HL_8OI5_068 HL_01182.1 | |
| HL_6S05_070 | 1/x/36:41 | No text annotation | geometric HL_5TBW_185 NA | |
| HL_6S05_071 | 1/x/88:93 | GNRA | homologous HL_5TBW_186 NA | |
| HL_6S05_084 | 1/y/47:56 | No text annotation | homologous HL_8P9A_186 HL_17803.1 | |
| HL_6S05_072 | 1/y/69:89 | No text annotation | homologous HL_8P4V_073 NA | |
| HL_6S05_073 | 1/y/108:114 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_6S05_074 | 1/y/124:129 | No text annotation | homologous HL_8C3A_077 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6S05_014 | No text annotation | ||
| HL_6S05_028 | No text annotation | ||
| HL_6S05_035 | No text annotation | ||
| HL_6S05_037 | No text annotation | ||
| HL_6S05_044 | No text annotation | ||
| HL_6S05_079 | GNRA with extra near cWW | ||
| HL_6S05_080 | No text annotation | ||
| HL_6S05_081 | tRNA anticodon loop | ||
| HL_6S05_083 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6S05_001 | 1/A/7:8, 1/y/150:152 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_6S05_002 | 1/A/13:15, 1/y/144:145 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_6S05_003 | 1/A/27:28, 1/A/56:58 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_6S05_159 | 1/A/82:89, 1/A/97:103 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8P9A_235 IL_53348.1 | |
| IL_6S05_005 | 1/A/123:124, 1/A/144:149 | No text annotation | geometric IL_5TBW_007 NA | |
| IL_6S05_006 | 1/A/125:127, 1/A/141:143 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_6S05_007 | 1/A/163:165, 1/A/257:258 | Single stack bend | homologous IL_5TBW_009 NA | |
| IL_6S05_008 | 1/A/169:173, 1/A/245:253 | No text annotation | ||
| IL_6S05_132 | 1/A/173:175, 1/A/244:245 | Single stack bend | geometric IL_7A0S_054 IL_15011.1 | |
| IL_6S05_133 | 1/A/175:176, 1/A/242:244 | No text annotation | geometric IL_8C3A_038 NA | |
| IL_6S05_009 | 1/A/177:179, 1/A/237:241 | Major groove platform with extra pair | homologous IL_5TBW_011 NA | |
| IL_6S05_160 | 1/A/189:191, 1/A/204:205 | No text annotation | homologous IL_8CRE_013 NA | |
| IL_6S05_011 | 1/A/337:339, 1/y/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_6S05_012 | 1/A/376:379, 1/A/390:403 | No text annotation | geometric IL_5TBW_014 NA | |
| IL_6S05_013 | 1/A/404:410, 1/y/13:19 | Triple sheared with non-canonical cWW | homologous IL_5TBW_015 NA | |
| IL_6S05_014 | 1/A/412:414, 1/y/10:11 | Single stack bend | geometric IL_7A0S_054 IL_15011.1 | |
| IL_6S05_015 | 1/A/414:415, 1/y/8:10 | Single stack bend | geometric IL_7A0S_054 IL_15011.1 | |
| IL_6S05_016 | 1/A/429:431, 1/A/628:630 | Isolated non-canonical cWW pair | homologous IL_5TBW_016 NA | |
| IL_6S05_018 | 1/A/510:513, 1/A/577:581 | Tandem non-canonical cWW pairs | geometric IL_1MFQ_004 IL_15225.1 | |
| IL_6S05_019 | 1/A/517:525, 1/A/567:573 | No text annotation | homologous IL_5TBW_019 NA | |
| IL_6S05_020 | 1/A/531:538, 1/A/553:561 | No text annotation | homologous IL_5TBW_020 NA | |
| IL_6S05_021 | 1/A/667:670, 1/A/792:795 | Tandem non-canonical cWW pairs | geometric IL_4K27_001 NA | |
| IL_6S05_022 | 1/A/680:684, 1/A/696:700 | No text annotation | homologous IL_5TBW_022 NA | |
| IL_6S05_023 | 1/A/725:728, 1/A/741:745 | UAA/GAN variation | homologous IL_5TBW_023 NA | |
| IL_6S05_024 | 1/A/752:753, 1/A/779:781 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_6S05_161 | 1/A/755:756, 1/A/775:777 | Single bulged U | homologous IL_8P9A_253 IL_97561.1 | |
| IL_6S05_026 | 1/A/758:763, 1/A/768:773 | No text annotation | homologous IL_5TBW_026 NA | |
| IL_6S05_027 | 1/A/803:805, 1/A/938:940 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_6S05_028 | 1/A/805:809, 1/A/931:938 | tHW-tHW cross-strand stack | geometric IL_5TBW_028 NA | |
| IL_6S05_029 | 1/A/833:834, 1/A/859:861 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_6S05_030 | 1/A/834:838, 1/A/855:859 | Triple sheared | geometric IL_4WF9_024 IL_15190.1 | |
| IL_6S05_031 | 1/A/869:872, 1/A/888:890 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_6S05_032 | 1/A/873:875, 1/A/886:887 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_6S05_033 | 1/A/907:910, 1/A/918:923 | No text annotation | ||
| IL_6S05_034 | 1/A/954:956, 1/A/965:967 | Isolated non-canonical cWW pair | homologous IL_5TBW_034 NA | |
| IL_6S05_035 | 1/A/969:970, 1/A/1111:1113 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_6S05_036 | 1/A/977:981, 1/A/1102:1104 | No text annotation | homologous IL_8P9A_264 IL_25463.2 | |
| IL_6S05_037 | 1/A/983:985, 1/A/1099:1100 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_6S05_038 | 1/A/990:997, 1/A/1052:1059 | No text annotation | ||
| IL_6S05_039 | 1/A/997:999, 1/A/1049:1052 | No text annotation | geometric IL_6ZDU_001 NA | |
| IL_6S05_136 | 1/A/997:1018, 1/A/1034:1052 | No text annotation | ||
| IL_6S05_040 | 1/A/1069:1071, 1/A/1087:1089 | Isolated non-canonical cWW pair | homologous IL_8C3A_047 NA | |
| IL_6S05_041 | 1/A/1120:1122, 1/A/1136:1138 | Isolated non-canonical cWW pair | homologous IL_5TBW_046 NA | |
| IL_6S05_042 | 1/A/1167:1171, 1/A/1328:1332 | UAA/GAN | homologous IL_5TBW_048 NA | |
| IL_6S05_043 | 1/A/1173:1180, 1/A/1325:1326 | SSU/LSU pseudoknot | geometric IL_5TBW_049 NA | |
| IL_6S05_044 | 1/A/1180:1182, 1/A/1324:1325 | Single bulged U | homologous IL_5TBW_050 NA | |
| IL_6S05_045 | 1/A/1187:1194, 1/A/1314:1319 | No text annotation | geometric IL_5TBW_051 NA | |
| IL_6S05_046 | 1/A/1194:1205, 1/A/1299:1314 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_6S05_047 | 1/A/1207:1209, 1/A/1296:1297 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_6S05_048 | 1/A/1215:1226, 1/A/1283:1290 | No text annotation | ||
| IL_6S05_049 | 1/A/1234:1238, 1/A/1250:1254 | No text annotation | ||
| IL_6S05_050 | 1/A/1376:1378, 1/A/1428:1431 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_6S05_139 | 1/A/1382:1387, 1/A/1420:1424 | Partly complementary | geometric IL_7VYX_004 IL_71154.1 | |
| IL_6S05_051 | 1/A/1385:1387, 1/A/1420:1421 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_6S05_052 | 1/A/1388:1397, 1/A/1413:1419 | No text annotation | geometric IL_4V88_508 NA | |
| IL_6S05_053 | 1/A/1398:1400, 1/A/1411:1412 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_6S05_054 | 1/A/1444:1450, 1/A/2354:2359 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5TBW_061 NA | |
| IL_6S05_140 | 1/A/1497:1505, 1/A/1513:1519 | No text annotation | ||
| IL_6S05_055 | 1/A/1500:1505, 1/A/1513:1516 | No text annotation | homologous IL_8C3A_066 NA | |
| IL_6S05_056 | 1/A/1532:1536, 1/A/1585:1590 | UAA/GAN | homologous IL_5TBW_063 NA | |
| IL_6S05_057 | 1/A/1618:1621, 1/A/1824:1826 | No text annotation | homologous IL_8C3A_070 NA | |
| IL_6S05_058 | 1/A/1623:1624, 1/A/1819:1822 | Major groove intercalation | geometric IL_4WF9_071 IL_78536.1 | |
| IL_6S05_059 | 1/A/1627:1631, 1/A/1811:1816 | No text annotation | homologous IL_8C3A_072 NA | |
| IL_6S05_060 | 1/A/1645:1649, 1/A/1806:1810 | Triple sheared | geometric IL_5TBW_067 NA | |
| IL_6S05_061 | 1/A/1660:1662, 1/A/1788:1789 | Single stack bend | geometric IL_7KGA_003 NA | |
| IL_6S05_062 | 1/A/1662:1663, 1/A/1786:1788 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_6S05_063 | 1/A/1669:1670, 1/A/1778:1780 | Single bulged C | geometric IL_5TBW_069 NA | |
| IL_6S05_064 | 1/A/1670:1671, 1/A/1776:1778 | Single stack bend | homologous IL_8C3A_076 NA | |
| IL_6S05_065 | 1/A/1694:1698, 1/A/1747:1752 | No text annotation | homologous IL_8C3A_077 NA | |
| IL_6S05_066 | 1/A/1702:1707, 1/A/1737:1743 | No text annotation | homologous IL_5TBW_072 NA | |
| IL_6S05_067 | 1/A/1711:1717, 1/A/1727:1733 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_6S05_068 | 1/A/1883:1889, 1/A/2346:2349 | No text annotation | homologous IL_5TBW_074 NA | |
| IL_6S05_069 | 1/A/1895:1897, 1/A/2338:2340 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_6S05_070 | 1/A/1898:1901, 1/A/2336:2337 | Major groove platform; stack outside cWW | homologous IL_8C3A_082 NA | |
| IL_6S05_143 | 1/A/1898:1906, 1/A/2333:2337 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_6S05_071 | 1/A/1901:1906, 1/A/2333:2336 | Intercalated tWH | geometric IL_4V9F_062 IL_28217.1 | |
| IL_6S05_144 | 1/A/1918:1923, 1/A/1928:1934 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_6S05_073 | 1/A/1940:1942, 1/A/2106:2108 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_6S05_145 | 1/A/1946:1948, 1/A/2098:2102 | No text annotation | ||
| IL_6S05_074 | 1/A/1947:1948, 1/A/2098:2101 | No text annotation | homologous IL_5TBW_080 NA | |
| IL_6S05_146 | 1/A/2128:2129, 1/A/2323:2325 | Single bulged A | homologous IL_8P9A_310 IL_14190.1 | |
| IL_6S05_076 | 1/A/2156:2161, 1/A/2173:2180 | No text annotation | homologous IL_8C3A_088 NA | |
| IL_6S05_077 | 1/A/2196:2201, 1/A/2241:2246 | No text annotation | ||
| IL_6S05_078 | 1/A/2204:2210, 1/A/2235:2238 | No text annotation | ||
| IL_6S05_079 | 1/A/2211:2217, 1/A/2228:2234 | No text annotation | homologous IL_8C3A_093 NA | |
| IL_6S05_080 | 1/A/2276:2277, 1/A/2307:2310 | Bulged stacked bases | geometric IL_5TBW_089 NA | |
| IL_6S05_081 | 1/A/2277:2288, 1/A/2304:2307 | No text annotation | homologous IL_8C3A_095 NA | |
| IL_6S05_082 | 1/A/2391:2394, 1/A/2986:2988 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_6S05_083 | 1/A/2396:2398, 1/A/2981:2984 | Major groove platform with intercalation | homologous IL_5TBW_092 NA | |
| IL_6S05_162 | 1/A/2408:2411, 1/A/2811:2813 | Isolated non-canonical cWW contact | geometric IL_1SI3_001 IL_23751.1 | |
| IL_6S05_084 | 1/A/2409:2412, 1/A/2810:2812 | Isolated non-canonical cWW pair | geometric IL_5C5W_002 NA | |
| IL_6S05_085 | 1/A/2412:2413, 1/A/2807:2810 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_6S05_149 | 1/A/2423:2425, 1/A/2604:2607 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_6S05_087 | 1/A/2444:2448, 1/A/2498:2503 | No text annotation | ||
| IL_6S05_151 | 1/A/2448:2469, 1/A/2476:2498 | No text annotation | ||
| IL_6S05_088 | 1/A/2520:2526, 1/A/2584:2587 | No text annotation | homologous IL_5TBW_096 NA | |
| IL_6S05_090 | 1/A/2614:2615, 1/A/2625:2627 | Single bulged A | homologous IL_5TBW_098 NA | |
| IL_6S05_091 | 1/A/2666:2668, 1/A/2686:2690 | Isolated tHS basepair with bulges | geometric IL_5TBW_099 NA | |
| IL_6S05_092 | 1/A/2714:2716, 1/A/2740:2741 | Single bulged A | geometric IL_4V88_399 NA | |
| IL_6S05_093 | 1/A/2718:2721, 1/A/2735:2738 | Tandem non-canonical cWW pairs | homologous IL_8C3A_109 NA | |
| IL_6S05_094 | 1/A/2769:2773, 1/A/2787:2789 | No text annotation | geometric IL_4P3T_002 NA | |
| IL_6S05_163 | 1/A/2823:2830, 1/A/2858:2867 | No text annotation | ||
| IL_6S05_096 | 1/A/2831:2834, 1/A/2855:2857 | No text annotation | geometric IL_8UO6_002 NA | |
| IL_6S05_153 | 1/A/2831:2839, 1/A/2849:2857 | No text annotation | ||
| IL_6S05_097 | 1/A/2834:2839, 1/A/2849:2855 | No text annotation | ||
| IL_6S05_098 | 1/A/2879:2881, 1/A/2943:2947 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_6S05_099 | 1/A/2881:2882, 1/A/2940:2943 | Multiple bulged bases | geometric IL_5TBW_109 NA | |
| IL_6S05_100 | 1/A/2889:2891, 1/A/2912:2914 | Isolated non-canonical cWW pair | homologous IL_8C3A_118 NA | |
| IL_6S05_154 | 1/A/2889:2892, 1/A/2909:2914 | No text annotation | homologous IL_8C3A_486 NA | |
| IL_6S05_101 | 1/A/2891:2892, 1/A/2909:2912 | Major groove platform with intercalation | geometric IL_4V9F_089 IL_94991.1 | |
| IL_6S05_102 | 1/A/2918:2920, 1/A/2926:2928 | Isolated non-canonical cWW pair | homologous IL_8C3A_120 NA | |
| IL_6S05_103 | 1/A/2960:2961, 1/A/2970:2972 | Single bulged A | homologous IL_5TBW_113 NA | |
| IL_6S05_104 | 1/A/3002:3007, 1/A/3139:3146 | No text annotation | ||
| IL_6S05_105 | 1/A/3012:3014, 1/A/3040:3042 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_6S05_106 | 1/A/3018:3025, 1/A/3030:3036 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_116 NA | |
| IL_6S05_107 | 1/A/3047:3051, 1/A/3091:3094 | Major groove minor groove platform with tHH | homologous IL_8C3A_126 NA | |
| IL_6S05_108 | 1/A/3054:3059, 1/A/3084:3088 | UAA/GAN related | homologous IL_8C3A_127 NA | |
| IL_6S05_109 | 1/A/3063:3064, 1/A/3077:3080 | No text annotation | homologous IL_8C3A_128 NA | |
| IL_6S05_164 | 1/A/3103:3107, 1/A/3127:3131 | UAA/GAN | homologous IL_8CRE_129 NA | |
| IL_6S05_165 | 1/A/3163:3166, 1/A/3284:3287 | Tandem non-canonical cWW pairs | geometric IL_4K27_001 NA | |
| IL_6S05_166 | 1/A/3167:3170, 1/A/3280:3283 | Tandem non-canonical cWW pairs | geometric IL_1JID_002 IL_15225.1 | |
| IL_6S05_113 | 1/A/3177:3179, 1/A/3210:3211 | Single bulged A | geometric IL_5TBW_123 NA | |
| IL_6S05_114 | 1/A/3179:3188, 1/A/3204:3210 | No text annotation | homologous IL_5TBW_124 NA | |
| IL_6S05_115 | 1/A/3193:3194, 1/A/3197:3199 | Single bulged U | homologous IL_5TBW_125 NA | |
| IL_6S05_116 | 1/A/3318:3320, 1/A/3387:3388 | Single bulged U | homologous IL_8C3A_136 NA | |
| IL_6S05_117 | 1/A/3324:3327, 1/A/3379:3383 | Tandem non-canonical cWW pairs | geometric IL_3WBM_002 NA | |
| IL_6S05_118 | 1/A/3327:3330, 1/A/3373:3379 | No text annotation | geometric IL_4LFB_008 IL_60988.1 | |
| IL_6S05_119 | 1/A/3332:3337, 1/A/3367:3371 | No text annotation | homologous IL_5TBW_133 NA | |
| IL_6S05_120 | 1/A/3340:3345, 1/A/3360:3364 | No text annotation | ||
| IL_6S05_121 | 1/x/15:16, 1/x/63:65 | No text annotation | ||
| IL_6S05_122 | 1/x/21:27, 1/x/53:58 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_6S05_123 | 1/x/28:29, 1/x/49:52 | Minor groove platform | geometric IL_5TBW_374 NA | |
| IL_6S05_124 | 1/x/29:30, 1/x/47:49 | Single stack bend | homologous IL_5TBW_375 NA | |
| IL_6S05_167 | 1/x/32:36, 1/x/41:45 | No text annotation | homologous IL_8P9A_368 IL_58103.12 | |
| IL_6S05_168 | 1/x/72:82, 1/x/98:106 | No text annotation | ||
| IL_6S05_126 | 1/x/83:85, 1/x/96:97 | Single stack bend | geometric IL_5J7L_269 NA | |
| IL_6S05_158 | 1/x/84:87, 1/x/94:96 | Isolated non-canonical cWW pair | homologous IL_8C3A_149 NA | |
| IL_6S05_127 | 1/y/44:64, 1/y/96:100 | No text annotation | geometric IL_5TBW_144 NA | |
| IL_6S05_128 | 1/y/64:66, 1/y/93:96 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA | |
| IL_6S05_129 | 1/y/68:69, 1/y/89:91 | Single bulged U | homologous IL_5TBW_146 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6S05_004 | 9x8 Sarcin-Ricin with GA cWW pair; G-bulge | ||
| IL_6S05_130 | No text annotation | ||
| IL_6S05_131 | No text annotation | ||
| IL_6S05_010 | Isolated non-canonical cWW pair | ||
| IL_6S05_017 | No text annotation | ||
| IL_6S05_134 | No text annotation | ||
| IL_6S05_135 | No text annotation | ||
| IL_6S05_025 | Isolated non-canonical cWW pair | ||
| IL_6S05_137 | Isolated non-canonical cWW pair | ||
| IL_6S05_138 | No text annotation | ||
| IL_6S05_141 | No text annotation | ||
| IL_6S05_142 | No text annotation | ||
| IL_6S05_072 | No text annotation | ||
| IL_6S05_075 | Isolated non-canonical cWW pair | ||
| IL_6S05_147 | No text annotation | ||
| IL_6S05_148 | Tandem non-canonical cWW pairs | ||
| IL_6S05_086 | Double sheared | ||
| IL_6S05_150 | Isolated cWH basepair | ||
| IL_6S05_089 | No text annotation | ||
| IL_6S05_152 | Partly complementary | ||
| IL_6S05_095 | No text annotation | ||
| IL_6S05_110 | UAA/GAN with extra cWW | ||
| IL_6S05_111 | No text annotation | ||
| IL_6S05_112 | No text annotation | ||
| IL_6S05_155 | No text annotation | ||
| IL_6S05_156 | No text annotation | ||
| IL_6S05_125 | No text annotation | ||
| IL_6S05_157 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6S05_001 | 1/A/113:123, 1/A/149:159, 1/A/262:267 | No text annotation | ||
| J3_6S05_017 | 1/A/337:356, 1/A/363:368, 1/y/21:26 | No text annotation | ||
| J3_6S05_002 | 1/A/369:376, 1/A/403:404, 1/y/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_6S05_018 | 1/A/369:379, 1/A/390:404, 1/y/19:20 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_6S05_003 | 1/A/502:503, 1/A/588:597, 1/A/606:611 | No text annotation | homologous J3_5TBW_003 NA | |
| J3_6S05_004 | 1/A/814:820, 1/A/905:907, 1/A/923:926 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_6S05_030 | 1/A/814:820, 1/A/905:909, 1/A/919:926 | No text annotation | ||
| J3_6S05_005 | 1/A/828:831, 1/A/863:867, 1/A/892:897 | No text annotation | homologous J3_5TBW_005 NA | |
| J3_6S05_006 | 1/A/986:987, 1/A/1062:1066, 1/A/1092:1098 | No text annotation | homologous J3_8C3A_051 NA | |
| J3_6S05_007 | 1/A/1230:1232, 1/A/1256:1266, 1/A/1275:1279 | No text annotation | ||
| J3_6S05_008 | 1/A/1479:1485, 1/A/1857:1859, 1/A/1871:1874 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_6S05_009 | 1/A/1488:1491, 1/A/1837:1843, 1/A/1852:1854 | No text annotation | homologous J3_5TBW_009 NA | |
| J3_6S05_031 | 1/A/1526:1531, 1/A/1591:1595, 1/A/1612:1613 | No text annotation | homologous J3_8P9A_055 J3_94309.1 | |
| J3_6S05_023 | 1/A/1537:1542, 1/A/1551:1565, 1/A/1574:1584 | No text annotation | ||
| J3_6S05_011 | 1/A/1631:1632, 1/A/1641:1645, 1/A/1810:1811 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_6S05_024 | 1/A/1654:1658, 1/A/1791:1792, 1/A/1796:1801 | No text annotation | homologous J3_8P9A_058 J3_08594.1 | |
| J3_6S05_012 | 1/A/2432:2435, 1/A/2512:2517, 1/A/2590:2597 | No text annotation | homologous J3_8C3A_008 NA | |
| J3_6S05_026 | 1/A/2651:2653, 1/A/2754:2765, 1/A/2793:2798 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_6S05_013 | 1/A/2664:2666, 1/A/2690:2692, 1/A/2701:2706 | No text annotation | homologous J3_5TBW_013 NA | |
| J3_6S05_014 | 1/A/2886:2889, 1/A/2914:2916, 1/A/2930:2936 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_6S05_015 | 1/A/3298:3300, 1/A/3314:3318, 1/A/3388:3390 | No text annotation | homologous J3_5TBW_015 NA | |
| J3_6S05_028 | 1/x/9:14, 1/x/66:67, 1/x/111:112 | No text annotation | homologous J3_8P9A_066 J3_26985.1 | |
| J3_6S05_029 | 1/y/44:45, 1/y/58:64, 1/y/96:100 | No text annotation | homologous J3_8P4V_024 NA | |
| J4_6S05_001 | 1/A/185:189, 1/A/205:208, 1/A/212:214, 1/A/226:231 | No text annotation | homologous J4_8P9A_013 J4_43318.1 | |
| J4_6S05_010 | 1/A/1451:1457, 1/A/1475:1476, 1/A/1877:1880, 1/A/2352:2353 | No text annotation | homologous J4_8CRE_003 NA | |
| J4_6S05_011 | 1/A/1492:1496, 1/A/1520:1525, 1/A/1614:1615, 1/A/1829:1836 | No text annotation | homologous J4_8P9A_015 J4_47264.1 | |
| J4_6S05_004 | 1/A/1674:1675, 1/A/1693:1698, 1/A/1747:1753, 1/A/1772:1773 | No text annotation | ||
| J4_6S05_005 | 1/A/1906:1915, 1/A/1937:1942, 1/A/2106:2122, 1/A/2331:2333 | No text annotation | ||
| J4_6S05_012 | 1/A/2130:2134, 1/A/2146:2150, 1/A/2186:2191, 1/A/2316:2322 | No text annotation | ||
| J4_6S05_007 | 1/A/2192:2194, 1/A/2248:2249, 1/A/2267:2276, 1/A/2310:2315 | No text annotation | homologous J4_8P9A_018 J4_42306.1 | |
| J4_6S05_008 | 1/A/2654:2660, 1/A/2710:2714, 1/A/2741:2742, 1/A/2751:2753 | No text annotation | ||
| J4_6S05_009 | 1/A/3010:3012, 1/A/3042:3043, 1/A/3098:3100, 1/A/3134:3136 | No text annotation | homologous J4_8P9A_020 J4_37757.1 | |
| J5_6S05_009 | 1/A/20:22, 1/y/35:42, 1/y/102:107, 1/y/115:116, 1/y/137:139 | No text annotation | homologous J5_8CRE_001 NA | |
| J5_6S05_002 | 1/A/112:123, 1/A/149:159, 1/A/262:272, 1/A/293:300, 1/A/315:319 | No text annotation | ||
| J5_6S05_003 | 1/A/112:124, 1/A/144:159, 1/A/262:272, 1/A/293:300, 1/A/315:319 | No text annotation | ||
| J5_6S05_004 | 1/A/658:663, 1/A/799:803, 1/A/940:944, 1/A/1375:1376, 1/A/1431:1437 | No text annotation | ||
| J5_6S05_005 | 1/A/675:678, 1/A/702:706, 1/A/713:721, 1/A/749:751, 1/A/782:787 | No text annotation | homologous J5_8P9A_012 J5_56629.1 | |
| J5_6S05_006 | 1/A/1491:1496, 1/A/1520:1531, 1/A/1591:1595, 1/A/1612:1615, 1/A/1829:1837 | No text annotation | ||
| J5_6S05_010 | 1/A/2399:2406, 1/A/2815:2823, 1/A/2867:2877, 1/A/2949:2957, 1/A/2975:2980 | No text annotation | ||
| J5_6S05_008 | 1/A/2416:2419, 1/A/2611:2614, 1/A/2627:2628, 1/A/2650:2651, 1/A/2798:2804 | No text annotation | homologous J5_8P9A_015 J5_96125.1 | |
| J6_6S05_001 | 1/A/22:27, 1/A/58:68, 1/A/75:79, 1/A/106:110, 1/A/321:332, 1/y/31:35 | No text annotation | ||
| J6_6S05_002 | 1/A/2416:2419, 1/A/2611:2614, 1/A/2627:2628, 1/A/2650:2653, 1/A/2754:2765, 1/A/2793:2804 | No text annotation | ||
| J7_6S05_001 | 1/A/949:954, 1/A/967:968, 1/A/1114:1117, 1/A/1141:1147, 1/A/1156:1161, 1/A/1338:1339, 1/A/1365:1370 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6S05_019 | No text annotation | ||
| J3_6S05_020 | No text annotation | ||
| J3_6S05_021 | No text annotation | ||
| J3_6S05_022 | No text annotation | ||
| J3_6S05_010 | No text annotation | ||
| J3_6S05_025 | No text annotation | ||
| J3_6S05_027 | No text annotation | ||
| J3_6S05_016 | No text annotation | ||
| J4_6S05_002 | No text annotation | ||
| J4_6S05_003 | No text annotation | ||
| J4_6S05_006 | No text annotation | ||
| J5_6S05_001 | No text annotation | ||
| J5_6S05_007 | No text annotation |
Coloring options: