HL_6S05_025

3D structure

PDB id

6S05 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGGUAAGCA

Length

9 nucleotides

Bulged bases

6S05|1|A|G|1131

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S05_025 not in the Motif Atlas

Geometric match to HL_7UQ6_001

Geometric discrepancy: 0.333

The information below is about HL_7UQ6_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

6S05|1|A|U|1125
6S05|1|A|G|1126
6S05|1|A|G|1127
6S05|1|A|U|1128
6S05|1|A|A|1129
6S05|1|A|A|1130
6S05|1|A|G|1131
6S05|1|A|C|1132
6S05|1|A|A|1133

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain a

60S ribosomal protein L29