HL_6S05_053
3D structure
- PDB id
- 6S05 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUGGGGCGG
- Length
- 9 nucleotides
- Bulged bases
- 6S05|1|A|G|2618
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6S05_053 not in the Motif Atlas
- Homologous match to HL_5TBW_054
- Geometric discrepancy: 0.1702
- The information below is about HL_5TBW_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47383.2
- Basepair signature
- cWW-F-F-cWW-F-F
- Number of instances in this motif group
- 11
Unit IDs
6S05|1|A|C|2616
6S05|1|A|U|2617
6S05|1|A|G|2618
6S05|1|A|G|2619
6S05|1|A|G|2620
6S05|1|A|G|2621
6S05|1|A|C|2622
6S05|1|A|G|2623
6S05|1|A|G|2624
Current chains
- Chain A
- 25S ribosomal RNA
Nearby chains
- Chain a
- 60S ribosomal protein L29
- Chain w
- 60S ribosomal export protein NMD3
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