3D structure

PDB id
6S05 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CAAAAGGG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6S05_056 not in the Motif Atlas
Homologous match to HL_8C3A_058
Geometric discrepancy: 0.1908
The information below is about HL_8C3A_058
Detailed Annotation
Pseudoknot geometry
Broad Annotation
No text annotation
Motif group
HL_93324.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
26

Unit IDs

6S05|1|A|C|2693
6S05|1|A|A|2694
6S05|1|A|A|2695
6S05|1|A|A|2696
6S05|1|A|A|2697
6S05|1|A|G|2698
6S05|1|A|G|2699
6S05|1|A|G|2700

Current chains

Chain A
25S ribosomal RNA

Nearby chains

Chain T
60S ribosomal protein L21-A
Chain l
60S ribosomal protein L42-A

Coloring options:


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